- Scientific Name
- Gastrodia elata
- Common Names
- -
- Bioproject
- PRJCA005619
- Biosample
- SAMC430501
- Accession No.
- GWHBDNU00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR301082
- GVM variations of the species
- -
- Submitter Organization
- -, Kunming Institute of Botany, Chinese Academy of Sciences
- Contact
- Jianqiang Wu(wujianqiang@mail.kib.ac.cn)
- Sequence author(s)
- Yuxing Xu
- Released Date
- 2021-07-14
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Celera Assembler v1.9
- Sequencing & coverage
- PacBio 100.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 1,036,742,279 |
| GC content | 34.49% |
| Chromosomes sequence No. | 18 |
| Organellas sequence No. | 1 |
| Genome sequence No. | 39 |
| Maximum genome sequence length (bp) | 132,907,784 |
| Minimum genome sequence length (bp) | 13,502 |
| Average genome sequence length (bp) | 26,583,135 |
| Genome sequence N50 (bp) | 51,759,935 |
| Genome sequence N90 (bp) | 36,350,181 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 33,365 | 33,365 |
| Chloroplast | 5 | 5 |
| Others | 191 | 191 |
| Total | 33,561 | 33,561 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,595 | 2,595 |
| chr10 | 1,795 | 1,795 |
| chr11 | 1,692 | 1,692 |
| chr12 | 1,681 | 1,681 |
| chr13 | 1,512 | 1,512 |
| chr14 | 1,662 | 1,662 |
| chr15 | 1,334 | 1,334 |
| chr16 | 1,157 | 1,157 |
| chr17 | 1,042 | 1,042 |
| chr18 | 1,143 | 1,143 |
| chr2 | 2,815 | 2,815 |
| chr3 | 2,651 | 2,651 |
| chr4 | 2,596 | 2,596 |
| chr5 | 2,315 | 2,315 |
| chr6 | 1,839 | 1,839 |
| chr7 | 1,876 | 1,876 |
| chr8 | 1,796 | 1,796 |
| chr9 | 1,864 | 1,864 |
| Chloroplast | 5 | 5 |
| Others | 191 | 191 |
| Total | 33,561 | 33,561 |