- Scientific Name
- Arabidopsis thaliana
- Common Names
- mouse-ear cress, thale-cress; thale cress; Arabis thaliana
- Bioproject
- PRJCA005809
- Biosample
- SAMC432494
- Accession No.
- GWHBDNP00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Faculty of Electronic and Information Engineering, Xi'an Jiaotong University
- Contact
- Bo Wang, wangboxjtu@xjtu.edu.cn
- Sequence author(s)
- Bo Wang
- Released Date
- 2021-08-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- NextDenovo v. 2.0
hifiasm v. 0.14-r312 - Sequencing & coverage
- PacBio 157.0
- Download
- DNA
- Publication(s)
- Bo Wang, et al. High-quality Arabidopsis thaliana genome assembly with Nanopore and HiFi long reads. Genomics, Proteomics and Bioinformatics. 2021.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBDNP00000000 | - | AT | Draft genome in scaffold level | 2021-07-12 |
DNA
|
| GWHBDNP00000000.1 | - | AT | Draft genome in scaffold level | 2021-08-12 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 133,725,193 |
| GC content | 36.34% |
| Genome sequence No. | 5 |
| Maximum genome sequence length (bp) | 32,659,241 |
| Minimum genome sequence length (bp) | 22,250,686 |
| Average genome sequence length (bp) | 26,745,039 |
| Genome sequence N50 (bp) | 26,161,332 |
| Genome sequence N90 (bp) | 22,250,686 |