- Scientific Name
- Saccharum officinarum
- Common Names
- noble cane, sugarcane;
- Bioproject
- PRJCA005569
- Biosample
- SAMC396702
- Accession No.
- GWHBEII00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
- Contact
- Ray Ming(rayming@illinois.edu)
- Sequence author(s)
- Jisen Zhang, Xingtan Zhang, Haibao Tang, Yuan Qin, Xiaokai Ma, Yin Li, Jishan Lin, Fan Zhu, Tyler Jones, Renyi Liu, Jingjing Yue, Wenping Zhang, Shengcheng Zhang, Shuai Chen, Xiuming Xu, Jing Lin, Zhimin Hou, Lihua Zhao, Liping Liu, Fang Deng, Xiuting Hua, Qing Zhang, Yongjun Wang, Zhen Li, Huiming Xu, Liming Wang, Panpan Ma, Lei Liu, Yongji Huang, Zhuang Meng, Dessiree Zerpa, Xiaodan Zhang, Liang Yu, Julie Nguyen, Jinjin Song, Mahpara Fatima, Zhenyang Liao, Yaying Ma, Chunfang Zheng, Fatemeh Pouryahya, Nicholas Labonte, Singha Dhungana, Muqing Zhang, Baoshan Chen, Liping Xu, Jingsheng Xu, Sanji Gao, Zuhu Deng, Jiankang Zhu, David Braun, Erik Sacks, David Sankoff, Ming-Li Wang, Kai Wang, Qingyi Yu, Jianping Wang, Chifumi Nagai
- Released Date
- 2021-09-26
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- FALCON version 0.3
CANU version 1.5 - Sequencing & coverage
- PacBio 66.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 6,804,976,965 |
| GC content | 44.58% |
| Genome sequence No. | 9,617 |
| Maximum genome sequence length (bp) | 149,504,399 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 707,599 |
| Genome sequence N50 (bp) | 82,862,972 |
| Genome sequence N90 (bp) | 52,719,268 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 117,757 | 117,757 |