- Scientific Name
- Juglans mandshurica
- Common Names
- -
- Bioproject
- PRJCA006358
- Biosample
- SAMC451603
- Accession No.
- GWHBEUN00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Tree Genetics Breeding, School of Forestry, Northeast Forestry University
- Contact
- Xiang Li, lx2016bjfu@163.com
- Sequence author(s)
- Xiang Li
- Released Date
- 2021-10-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- HiFiasm 0.2.0
- Sequencing & coverage
- PacBio 96.26
- Download
- DNA GFF RNA Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 548,694,591 |
| GC content | 36.72% |
| Chromosomes sequence No. | 16 |
| Genome sequence No. | 623 |
| Maximum genome sequence length (bp) | 52,477,553 |
| Minimum genome sequence length (bp) | 11,913 |
| Average genome sequence length (bp) | 880,730 |
| Genome sequence N50 (bp) | 35,382,463 |
| Genome sequence N90 (bp) | 22,121,559 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 47,355 | 47,355 |
| Others | 1,016 | 1,016 |
| Total | 48,371 | 48,371 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,690 | 4,690 |
| chr10 | 2,890 | 2,890 |
| chr11 | 2,663 | 2,663 |
| chr12 | 2,605 | 2,605 |
| chr13 | 2,547 | 2,547 |
| chr14 | 2,190 | 2,190 |
| chr15 | 1,933 | 1,933 |
| chr16 | 1,586 | 1,586 |
| chr2 | 4,237 | 4,237 |
| chr3 | 3,728 | 3,728 |
| chr4 | 3,196 | 3,196 |
| chr5 | 3,611 | 3,611 |
| chr6 | 3,021 | 3,021 |
| chr7 | 2,504 | 2,504 |
| chr8 | 3,310 | 3,310 |
| chr9 | 2,644 | 2,644 |
| Others | 1,016 | 1,016 |
| Total | 48,371 | 48,371 |