- Scientific Name
- Zizania latifolia
- Common Names
- Zizania caduciflora
- Bioproject
- PRJCA006798
- Biosample
- SAMC464080
- Accession No.
- GWHBFHI00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Life Sciences, Shanghai Normal University
- Contact
- Ning Yan, yanning@caas.cn
- Sequence author(s)
- Ning Yan
- Released Date
- 2021-12-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu v2
- Sequencing & coverage
- Nanopore 112.0
Illumina X10 120.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Ning Yan, et al. Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis. Communications Biology. 2022, 5.
Statistics of Genome Assembly
| Genome size (bp) | 547,397,560 |
| GC content | 43.87% |
| Chromosomes sequence No. | 2 |
| Genome sequence No. | 164 |
| Maximum genome sequence length (bp) | 49,614,183 |
| Minimum genome sequence length (bp) | 20,198 |
| Average genome sequence length (bp) | 3,337,790 |
| Genome sequence N50 (bp) | 32,785,325 |
| Genome sequence N90 (bp) | 21,753,964 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 6,752 | 6,752 |
| Others | 32,037 | 32,037 |
| Total | 38,789 | 38,789 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,398 | 3,398 |
| chr2 | 3,354 | 3,354 |
| Others | 32,037 | 32,037 |
| Total | 38,789 | 38,789 |