- Scientific Name
- Oryza sativa
- Common Names
- red rice, rice; Asian cultivated rice;
- Bioproject
- PRJCA004295
- Biosample
- SAMC447578
- Accession No.
- GWHBFLM00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 18,166,415 (SNP), 952,283 (Indel)
- Submitter Organization
- PLANT CENTER, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Lianguang Shang(shanglianguang@163.com)
- Sequence author(s)
- Lianguang Shang
- Released Date
- 2022-07-30
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- WTDBG 2.5
- Sequencing & coverage
- Nanopore 80
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Lianguang Shang, et al. A super pan-genomic landscape of rice. Cell Research. 2022.
Statistics of Genome Assembly
| Genome size (bp) | 394,043,376 |
| GC content | 43.82% |
| Contig sequence No. | 779 |
| Maximum contig sequence length (bp) | 25,472,166 |
| Minimum contig sequence length (bp) | 1,113 |
| Average contig sequence length (bp) | 505,832 |
| Contig N50 (bp) | 12,153,546 |
| Contig N90 (bp) | 2,700,479 |