- Scientific Name
- Orychophragmus violaceus
- Common Names
- -
- Bioproject
- PRJCA007470
- Biosample
- SAMC532245
- Accession No.
- GWHBGBQ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Department of Biotechnology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- YInqing Yang, 82101209705@caas.cn
- Sequence author(s)
- Yinqing Yang
- Released Date
- 2021-12-08
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Miniasm v0.2
- Sequencing & coverage
- Oxford Nanopore Technology 164.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Kang Zhang, et al. The genome of Orychophragmus violaceus provides genomic insights into the evolution of Brassicaceae polyploidization and its distinct traits. Plant Communications. 2022.
Statistics of Genome Assembly
| Genome size (bp) | 1,334,224,007 |
| GC content | 39.01% |
| Super-scaffold sequence No. | 177 |
| Maximum super-scaffold sequence length (bp) | 120,969,918 |
| Minimum super-scaffold sequence length (bp) | 37,571 |
| Average super-scaffold sequence length (bp) | 7,537,989 |
| Super-scaffold N50 (bp) | 99,979,558 |
| Super-scaffold N90 (bp) | 89,013,925 |
| Contig sequence No. | 3,288 |
| Maximum contig sequence length (bp) | 8,123,629 |
| Minimum contig sequence length (bp) | 7,516 |
| Average contig sequence length (bp) | 405,313 |
| Contig N50 (bp) | 1,285,345 |
| Contig N90 (bp) | 124,033 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Total | 55,279 | 55,279 | 110,558 |