- Scientific Name
- Rhododendron
- Common Names
- Tsusiophyllum
- Bioproject
- PRJCA006812
- Biosample
- SAMC541806
- Accession No.
- GWHBHLU00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR360689, CRR360688, CRR360687, CRR360686, CRR360685, more
- GVM variations of the species
- -
- Submitter Organization
- Key Laboratory for Bio-Resource Eco-Environment of Ministry of Education, Sichuan University
- Contact
- Yazhen Ma(mayazhen1222@126.com)
- Sequence author(s)
- Yazhen Ma
- Released Date
- 2022-12-11
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Falcon 0.5.0
- Sequencing & coverage
- PacBio 105.3
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Yazhen Ma, et al. Pervasive hybridization during evolutionary radiation of Rhododendron subgenus Hymenanthes in mountains of southwest China. National Science Review. 2022.
Statistics of Genome Assembly
| Genome size (bp) | 673,070,214 |
| GC content | 40.45% |
| Chromosomes sequence No. | 13 |
| Genome sequence No. | 684 |
| Maximum genome sequence length (bp) | 63,189,704 |
| Minimum genome sequence length (bp) | 239 |
| Average genome sequence length (bp) | 984,021 |
| Genome sequence N50 (bp) | 47,141,418 |
| Genome sequence N90 (bp) | 32,814,718 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 35,270 | 35,270 |
| Others | 1,822 | 1,822 |
| Total | 37,092 | 37,092 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,182 | 3,182 |
| chr10 | 2,289 | 2,289 |
| chr11 | 2,742 | 2,742 |
| chr12 | 2,866 | 2,866 |
| chr13 | 2,409 | 2,409 |
| chr2 | 3,049 | 3,049 |
| chr3 | 2,837 | 2,837 |
| chr4 | 2,484 | 2,484 |
| chr5 | 2,897 | 2,897 |
| chr6 | 2,936 | 2,936 |
| chr7 | 2,778 | 2,778 |
| chr8 | 2,269 | 2,269 |
| chr9 | 2,532 | 2,532 |
| Others | 1,822 | 1,822 |
| Total | 37,092 | 37,092 |