- Scientific Name
- Gastrodia elata
- Common Names
- -
- Bioproject
- PRJCA000931
- Biosample
- SAMC397101
- Accession No.
- GWHBHOU00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- -, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences
- Contact
- Zhongyi Hua(njbxhzy@hotmail.com)
- Sequence author(s)
- Yuan Yuan
- Released Date
- 2022-12-30
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Falcon v0.2.2
- Sequencing & coverage
- PacBio 103.0
Illumina HiSeq 4000 220.0 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Zhongyi Hua, et al. Chromosome-level genome assembly and population genomics unveil strigolactone-regulated growth adaptation in the mycoheterotrophic orchid Gastrodia elata. Horticulture Research. 2026, 13(7): uhag099.
Statistics of Genome Assembly
| Genome size (bp) | 1,071,159,362 |
| GC content | 34.36% |
| Chromosomes sequence No. | 18 |
| Genome sequence No. | 288 |
| Maximum genome sequence length (bp) | 132,890,654 |
| Minimum genome sequence length (bp) | 10,000 |
| Average genome sequence length (bp) | 3,719,303 |
| Genome sequence N50 (bp) | 54,417,124 |
| Genome sequence N90 (bp) | 38,772,005 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 36,674 | 36,674 |
| Others | 244 | 244 |
| Total | 36,918 | 36,918 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,100 | 3,100 |
| chr10 | 1,908 | 1,908 |
| chr11 | 1,855 | 1,855 |
| chr12 | 1,695 | 1,695 |
| chr13 | 1,625 | 1,625 |
| chr14 | 1,763 | 1,763 |
| chr15 | 1,464 | 1,464 |
| chr16 | 1,279 | 1,279 |
| chr17 | 1,100 | 1,100 |
| chr18 | 1,091 | 1,091 |
| chr2 | 3,209 | 3,209 |
| chr3 | 3,054 | 3,054 |
| chr4 | 2,836 | 2,836 |
| chr5 | 2,706 | 2,706 |
| chr6 | 2,006 | 2,006 |
| chr7 | 1,905 | 1,905 |
| chr8 | 2,007 | 2,007 |
| chr9 | 2,071 | 2,071 |
| Others | 244 | 244 |
| Total | 36,918 | 36,918 |