- Scientific Name
- Cyprinus carpio
- Common Names
- carp, fancy carp, koi, mirror carp; common carp;
- Bioproject
- PRJCA009020
- Biosample
- SAMC711003
- Accession No.
- GWHBHRW00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR503101, CRR503102
- GVM variations of the species
- -
- Submitter Organization
- COLLEGE OF OCEAN & EARTH SCIENCES, Xiamen University
- Contact
- Lin Chen(chenlin_920@126.com)
- Sequence author(s)
- Peng Xu
- Released Date
- 2023-02-14
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm CC 3.0
- Sequencing & coverage
- Pacbio Sequel II 26.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Lin Chen, et al. Evolutionary divergence of subgenomes in common carp provides insights into speciation and allopolyploid success. Fundamental research. 2024, 4(3): 589-602.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBHRW00000000 | - | CC 3.0 | Draft genome in chromosome level | 2023-02-14 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 1,579,378,574 |
| GC content | 37.19% |
| Chromosomes sequence No. | 50 |
| Genome sequence No. | 1,477 |
| Maximum genome sequence length (bp) | 46,234,316 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 1,069,315 |
| Genome sequence N50 (bp) | 28,322,000 |
| Genome sequence N90 (bp) | 20,266,301 |