- Scientific Name
- Aegilops speltoides
- Common Names
- Sitopsis speltoides, Triticum speltoides
- Bioproject
- PRJCA007359
- Biosample
- SAMC490529
- Accession No.
- GWHBFXR00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Key laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University
- Contact
- Ning Li, lin690@nenu.edu.cn
- Sequence author(s)
- Ning Li
- Released Date
- 2022-04-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg2 version 2
- Sequencing & coverage
- Oxford Nanopore 198.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBFXR00000000 | - | Aegilops speltoides 01 | Draft genome in chromosome level | 2021-12-29 |
DNA
|
| GWHBFXR00000000.1 | - | Aegilops speltoides | Draft genome in chromosome level | 2022-04-12 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 4,110,737,152 |
| GC content | 46.34% |
| Chromosomes sequence No. | 7 |
| Genome sequence No. | 10,842 |
| Maximum genome sequence length (bp) | 597,334,302 |
| Minimum genome sequence length (bp) | 1,744 |
| Average genome sequence length (bp) | 379,149 |
| Genome sequence N50 (bp) | 530,918,953 |
| Genome sequence N90 (bp) | 470,101,627 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 36,113 | 36,113 |
| Others | 1,454 | 1,454 |
| Total | 37,567 | 37,567 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,416 | 4,416 |
| chr2 | 6,038 | 6,038 |
| chr3 | 5,795 | 5,795 |
| chr4 | 3,751 | 3,751 |
| chr5 | 5,625 | 5,625 |
| chr6 | 4,548 | 4,548 |
| chr7 | 5,940 | 5,940 |
| Others | 1,454 | 1,454 |
| Total | 37,567 | 37,567 |