- Scientific Name
- Aegilops searsii
- Common Names
- -
- Bioproject
- PRJCA007359
- Biosample
- SAMC490531
- Accession No.
- GWHBFXU00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Key laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University
- Contact
- Ning Li, lin690@nenu.edu.cn
- Sequence author(s)
- Ning Li
- Released Date
- 2022-04-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg2 version 2
- Sequencing & coverage
- Oxford Nanopore 139.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBFXU00000000 | - | Aegilops searsii 01 | Draft genome in chromosome level | 2021-12-25 |
DNA
|
| GWHBFXU00000000.1 | - | Aegilops searsii | Draft genome in chromosome level | 2022-04-12 |
DNA
GFF
RNA
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 5,336,892,668 |
| GC content | 46.01% |
| Chromosomes sequence No. | 7 |
| Genome sequence No. | 24,640 |
| Maximum genome sequence length (bp) | 750,148,016 |
| Minimum genome sequence length (bp) | 1,477 |
| Average genome sequence length (bp) | 216,595 |
| Genome sequence N50 (bp) | 646,289,097 |
| Genome sequence N90 (bp) | 94,610 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 36,824 | 36,824 |
| Others | 1,118 | 1,118 |
| Total | 37,942 | 37,942 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,545 | 4,545 |
| chr2 | 6,144 | 6,144 |
| chr3 | 5,716 | 5,716 |
| chr4 | 4,030 | 4,030 |
| chr5 | 5,708 | 5,708 |
| chr6 | 4,603 | 4,603 |
| chr7 | 6,078 | 6,078 |
| Others | 1,118 | 1,118 |
| Total | 37,942 | 37,942 |