- Scientific Name
- Aegilops longissima
- Common Names
- Triticum longissimum
- Bioproject
- PRJCA007359
- Biosample
- SAMC490532
- Accession No.
- GWHBFXT00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Key laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University
- Contact
- Ning Li, lin690@nenu.edu.cn
- Sequence author(s)
- Ning Li
- Released Date
- 2022-04-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg2 version 2
- Sequencing & coverage
- Oxford Nanopore 134.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBFXT00000000 | - | Aegilops longissima 01 | Draft genome in chromosome level | 2021-12-25 |
DNA
|
| GWHBFXT00000000.1 | - | Aegilops longissima | Draft genome in chromosome level | 2022-04-12 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 5,800,028,507 |
| GC content | 46.40% |
| Chromosomes sequence No. | 7 |
| Genome sequence No. | 21,821 |
| Maximum genome sequence length (bp) | 852,151,948 |
| Minimum genome sequence length (bp) | 1,321 |
| Average genome sequence length (bp) | 265,800 |
| Genome sequence N50 (bp) | 757,558,930 |
| Genome sequence N90 (bp) | 662,208,516 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 35,706 | 35,706 |
| Others | 1,446 | 1,446 |
| Total | 37,152 | 37,152 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,596 | 4,596 |
| chr2 | 6,049 | 6,049 |
| chr3 | 5,425 | 5,425 |
| chr4 | 4,754 | 4,754 |
| chr5 | 5,681 | 5,681 |
| chr6 | 4,411 | 4,411 |
| chr7 | 4,790 | 4,790 |
| Others | 1,446 | 1,446 |
| Total | 37,152 | 37,152 |