- Scientific Name
- Bos taurus
- Common Names
- bovine, cow, dairy cow, domestic cattle, domestic cow, ox; cattle; Bos bovis, Bos primigenius taurus
- Bioproject
- PRJCA008887
- Biosample
- SAMC754780
- Accession No.
- GWHBISA00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR476868
- GVM variations of the species
- 53,609,957 (SNP), 6,724,343 (Indel)
- Submitter Organization
- National Center of Biomedical Analysis, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & PekingUnion Medical College
- Contact
- Jiaqi Wu, jqwu@xmail.ncba.ac.cn
- Sequence author(s)
- Jiaqi Wu
- Released Date
- 2023-09-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- NextDenovo 2.2
- Sequencing & coverage
- Nanopore 87.75
PacBio 14.43
Illumina HiSeq TenX 173.84 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Tingting Li, et al. De novo genome assembly depicts the immune genomic characteristics of cattle. Nature Communications. 2023, 14(1): 6601.
Statistics of Genome Assembly
| Genome size (bp) | 2,711,638,631 |
| GC content | 41.94% |
| Genome sequence No. | 95 |
| Maximum genome sequence length (bp) | 163,047,448 |
| Minimum genome sequence length (bp) | 3,545 |
| Average genome sequence length (bp) | 28,543,565 |
| Genome sequence N50 (bp) | 105,634,534 |
| Genome sequence N90 (bp) | 53,386,628 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 19,631 | 19,631 |