- Scientific Name
- Eucommia ulmoides
- Common Names
- -
- Bioproject
- PRJCA005994
- Biosample
- SAMC436989
- Accession No.
- GWHBISF00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of biological science technology, Beijing Forestry University
- Contact
- Yun Li, liyun1365@163.com
- Sequence author(s)
- Xiangyang Kang, Yun Li
- Released Date
- 2022-04-26
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- FALCON v. 0.7
Quiver v. 5.0.1
Pilon v. 1.18
SAMTOOLS v. 1.3 - Sequencing & coverage
- PacBio 95.07
Hi-C 130.0
Illumina 138.86 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Yun Li, et al. High-quality de novo assembly of the Eucommia ulmoides haploid genome provides new insights into evolution and rubber biosynthesis. Horticulture Research. 2020, 7(1): 183.
Statistics of Genome Assembly
| Genome size (bp) | 947,857,663 |
| GC content | 35.17% |
| Genome sequence No. | 501 |
| Maximum genome sequence length (bp) | 79,924,447 |
| Minimum genome sequence length (bp) | 330 |
| Average genome sequence length (bp) | 1,891,931 |
| Genome sequence N50 (bp) | 53,150,112 |
| Genome sequence N90 (bp) | 43,436,084 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 25,477 | 25,477 |