- Scientific Name
- Akebia trifoliata
- Common Names
- -
- Bioproject
- PRJCA003847
- Biosample
- SAMC277945
- Accession No.
- GWHBISH00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Plant Breeding and Genetics, Sichuan Agricultural University
- Contact
- Peigao Luo(lpglab@sicau.edu.cn)
- Sequence author(s)
- Shengfu Zhong, Bin Li, Wei Chen, Lili Wang, Ju Guan, Qiang Wang, Zujun Yang, Hao Yang, Xianshu Wang, Xiaojiao Yu, Peng Fu, HongChang Liu, Chen Chen, Feiquan Tan, Tianheng Ren, Jinliang Shen, Peigao Luo
- Released Date
- 2022-04-26
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu v1.5
MHAP v2.1
Wtdbg v2.0
MUMmer v4.0.0
Pilon v1.22 - Sequencing & coverage
- PacBio 92.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Shengfu Zhong, et al. Characterization of the MADS-Box Gene Family in Akebia trifoliata and Their Evolutionary Events in Angiosperms. Genes. 2022, 10(13): 1777.
Statistics of Genome Assembly
| Genome size (bp) | 652,796,637 |
| GC content | 35.00% |
| Genome sequence No. | 913 |
| Maximum genome sequence length (bp) | 59,574,533 |
| Minimum genome sequence length (bp) | 2,993 |
| Average genome sequence length (bp) | 715,002 |
| Genome sequence N50 (bp) | 35,751,958 |
| Genome sequence N90 (bp) | 27,207,102 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 24,001 | 24,001 |