- Scientific Name
- Gossypium raimondii
- Common Names
- Peruvian cotton;
- Bioproject
- PRJCA008338
- Biosample
- SAMC605802
- Accession No.
- GWHBISS00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR386969
- GVM variations of the species
- -
- Submitter Organization
- College of life sciences, Peking University
- Contact
- Gai Huang, huanggailuck@sina.cn
- Sequence author(s)
- Gai Huang
- Released Date
- 2024-05-09
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hybrid assembly by Hifiasm-UL version: 0.19.3
- Sequencing & coverage
- Nanopore ultralong reads 130.0
PacBio High Fidelity (HiFi) reads 93.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 776,015,441 |
| GC content | 33.28% |
| Chromosomes sequence No. | 11 |
| Genome sequence No. | 13 |
| Maximum genome sequence length (bp) | 66,615,673 |
| Minimum genome sequence length (bp) | 50,402,159 |
| Average genome sequence length (bp) | 59,693,495 |
| Genome sequence N50 (bp) | 59,671,432 |
| Genome sequence N90 (bp) | 53,182,005 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 45,108 | 45,108 |
| Others | 8,059 | 8,059 |
| Total | 53,167 | 53,167 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,738 | 3,738 |
| chr10 | 4,342 | 4,342 |
| chr11 | 5,316 | 5,316 |
| chr13 | 4,062 | 4,062 |
| chr2 | 3,048 | 3,048 |
| chr3 | 4,086 | 4,086 |
| chr4 | 3,306 | 3,306 |
| chr5 | 5,499 | 5,499 |
| chr6 | 3,726 | 3,726 |
| chr8 | 4,242 | 4,242 |
| chr9 | 3,743 | 3,743 |
| Others | 8,059 | 8,059 |
| Total | 53,167 | 53,167 |