Scientific Name
Gossypium raimondii
Common Names
Peruvian cotton;
Bioproject
PRJCA008338
Biosample
SAMC605802
Accession No.
GWHBISS00000000
GWH reannotation accession
-
GSA raw reads
CRR386969
GVM variations of the species
-
Submitter Organization
College of life sciences, Peking University
Contact
Gai Huang, huanggailuck@sina.cn
Sequence author(s)
Gai Huang
Released Date
2024-05-09
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
Hybrid assembly by Hifiasm-UL version: 0.19.3
Sequencing & coverage
Nanopore ultralong reads 130.0
PacBio High Fidelity (HiFi) reads 93.0
Download
DNA GFF RNA Protein
Publication(s)
-
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHBISS00000000 - T2T_DD5_v5.0 Draft genome in scaffold level 2024-05-09 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 776,015,441
GC content 33.28%
Chromosomes sequence No. 11
Genome sequence No. 13
Maximum genome sequence length (bp) 66,615,673
Minimum genome sequence length (bp) 50,402,159
Average genome sequence length (bp) 59,693,495
Genome sequence N50 (bp) 59,671,432
Genome sequence N90 (bp) 53,182,005
Annotation of Whole Genome Assembly
Protein Total
Chromosome 45,108 45,108
Others 8,059 8,059
Total 53,167 53,167
Annotation Details
ChrID Protein Total
chr1 3,738 3,738
chr10 4,342 4,342
chr11 5,316 5,316
chr13 4,062 4,062
chr2 3,048 3,048
chr3 4,086 4,086
chr4 3,306 3,306
chr5 5,499 5,499
chr6 3,726 3,726
chr8 4,242 4,242
chr9 3,743 3,743
Others 8,059 8,059
Total 53,167 53,167