- Scientific Name
- Cairina moschata
- Common Names
- muscovy, musky duck; Muscovy duck;
- Bioproject
- PRJCA009398
- Biosample
- SAMC744927
- Accession No.
- GWHBJBF00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences
- Contact
- Ya-Ping Zhang, zhangyp@mail.kiz.ac.cn
- Sequence author(s)
- Min-sheng Peng
- Released Date
- 2022-12-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Supernova 1.2.0
DBG2OLC 2016-08
Sparc 2016-06
3DDNA 201008 - Sequencing & coverage
- Nanopore 30.0
10X genomic 130.0
Hi-C 100.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Mingmin Xu, et al. Chromosome-level genome assembly of the Muscovy duck provides insight into fatty liver susceptibility. Genomics. 2022, 114(6): 110518.
Statistics of Genome Assembly
| Genome size (bp) | 1,097,325,719 |
| GC content | 41.77% |
| Genome sequence No. | 302 |
| Maximum genome sequence length (bp) | 200,483,415 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 3,633,529 |
| Genome sequence N50 (bp) | 83,167,000 |
| Genome sequence N90 (bp) | 12,676,168 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 15,654 | 15,654 |