- Scientific Name
- Pseudomonas agarici
- Common Names
- -
- Bioproject
- PRJCA009110
- Biosample
- SAMC727298
- Accession No.
- GWHBJCV00000000
- GWH reannotation accession
- GWHRA_BJCV00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- -, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences
- Contact
- pengjie han, hanpj1993@126.com
- Sequence author(s)
- yuan Yuan
- Released Date
- 2022-05-24
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- Canu 1.5
- Sequencing & coverage
- Nanopore 416.0
DNBSEQ 180.0 - Download
- DNA GFF RNA CDS Protein Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- Pengjie Han, et al. A Mycorrhizal Bacteria Strain Isolated From Polyporus umbellatus Exhibits Broad-Spectrum Antifungal Activity. Frontiers in Plant Science. 2022, 13: 954160.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJCV00000000 | GWHRA_BJCV00000000.1 | Pseudomonas agarici ZL8 | Complete genome | 2022-05-24 |
DNA
GFF
RNA
CDS
Protein
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 7,447,229 |
| GC content | 62.35% |
| Chromosomes sequence No. | 1 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 6,675 | 6,675 |
| Others | 37 | 37 |
| Total | 6,712 | 6,712 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 6,675 | 6,675 |
| Others | 37 | 37 |
| Total | 6,712 | 6,712 |
Statistics of Genome Assembly
| Genome size (bp) | 7,447,229 |
| GC content | 62.35% |
| Chromosomes sequence No. | 1 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 6,570 | 69 | 19 | 1 | 56 | 14 | 6,729 |