- Scientific Name
- Escherichia coli
- Common Names
- E. coli; Bacillus coli, Bacterium coli commune, Bacterium coli, Enterococcus coli
- Bioproject
- PRJCA009735
- Biosample
- SAMC782638
- Accession No.
- GWHBJHP00000000
- GWH reannotation accession
- GWHRA_BJHP00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of veterinary Medicine, China Agricultural University
- Contact
- Dongyan Shao(563608176@qq.com), Yingbo Shen(shenyb123@163.com)
- Sequence author(s)
- Dongyan Shao, Yingbo Shen
- Released Date
- 2022-06-09
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes 3.9.0
- Sequencing & coverage
- Illumina HiSeq 245.7701348
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- Yingbo Shen, et al. Genomic Shift in Population Dynamics of mcr-1-positive Escherichia coli in Human Carriage. Genomics, Proteomics & Bioinformatics. 2022.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJHP00000000 | GWHRA_BJHP00000000.1 | 19ZY284 | Draft genome in contig level | 2022-06-09 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,296,792 |
| GC content | 50.46% |
| Contig sequence No. | 149 |
| Maximum contig sequence length (bp) | 762,605 |
| Minimum contig sequence length (bp) | 200 |
| Average contig sequence length (bp) | 35,549 |
| Contig N50 (bp) | 162,220 |
| Contig N90 (bp) | 32,399 |
Statistics of Genome Assembly
| Genome size (bp) | 5,296,792 |
| GC content | 50.46% |
| Contig sequence No. | 149 |
| Maximum contig sequence length (bp) | 762,605 |
| Minimum contig sequence length (bp) | 200 |
| Average contig sequence length (bp) | 35,549 |
| Contig N50 (bp) | 162,220 |
| Contig N90 (bp) | 32,399 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5,056 | 79 | 4 | 6 | 172 | 171 | 5,488 |