- Scientific Name
- Carthamus tinctorius
- Common Names
- safflower;
- Bioproject
- PRJCA009936
- Biosample
- SAMC797441
- Accession No.
- GWHBJIR00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Pharmacy College, Chengdu University of Traditional Chinese Medicine
- Contact
- Shuai Guo, shuai93guo@163.com
- Sequence author(s)
- Jiang Chen, Shuai Guo
- Released Date
- 2022-06-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu 1.71
- Sequencing & coverage
- nanopore 100.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 1,174,349,068 |
| GC content | 38.41% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 543 |
| Maximum genome sequence length (bp) | 185,004,703 |
| Minimum genome sequence length (bp) | 4,024 |
| Average genome sequence length (bp) | 2,162,705 |
| Genome sequence N50 (bp) | 96,393,662 |
| Genome sequence N90 (bp) | 72,666,132 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 22,884 | 22,884 |
| Others | 335 | 335 |
| Total | 23,219 | 23,219 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 6,480 | 6,480 |
| chr10 | 1,004 | 1,004 |
| chr11 | 1,321 | 1,321 |
| chr12 | 1,005 | 1,005 |
| chr2 | 1,870 | 1,870 |
| chr3 | 1,772 | 1,772 |
| chr4 | 1,735 | 1,735 |
| chr5 | 1,501 | 1,501 |
| chr6 | 1,815 | 1,815 |
| chr7 | 2,027 | 2,027 |
| chr8 | 1,079 | 1,079 |
| chr9 | 1,275 | 1,275 |
| Others | 335 | 335 |
| Total | 23,219 | 23,219 |