- Scientific Name
- Brassica oleracea var. botrytis
- Common Names
- cauliflower; Brassica oleracea subsp. botrytis
- Bioproject
- PRJCA008644
- Biosample
- SAMC633647
- Accession No.
- GWHBJSH00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Institute of Crop Germplasm and Biotechnology, Tianjin Academy of Agricultural Sciences
- Contact
- Rui Chen, chenrui_taas@126.com
- Sequence author(s)
- Rui Chen, Tao Lin, Deling Sun
- Released Date
- 2023-12-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU v2.2
HERA v1 - Sequencing & coverage
- PacBio 121.0
Illumina HiSeq X Ten 81.0
HiC 89.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Yuyao Yang, et al. Construction of an SNP fingerprinting database and population genetic analysis of329 cauliflower cultivars. BMC Plant Biology. 2022, 22.
Statistics of Genome Assembly
| Genome size (bp) | 568,515,523 |
| GC content | 36.77% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 10 |
| Maximum genome sequence length (bp) | 79,842,669 |
| Minimum genome sequence length (bp) | 11,402,142 |
| Average genome sequence length (bp) | 56,851,552 |
| Genome sequence N50 (bp) | 65,683,070 |
| Genome sequence N90 (bp) | 48,937,047 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Chromosome | 73,514 | 22,798 | 96,312 |
| Others | 705 | 178 | 883 |
| Total | 74,219 | 22,976 | 97,195 |
Annotation Details
| ChrID | Protein | Pseudogene | Total |
|---|---|---|---|
| chr1 | 7,160 | 2,181 | 9,341 |
| chr2 | 7,921 | 2,399 | 10,320 |
| chr3 | 11,208 | 3,664 | 14,872 |
| chr4 | 8,553 | 2,607 | 11,160 |
| chr5 | 7,766 | 2,434 | 10,200 |
| chr6 | 6,338 | 2,088 | 8,426 |
| chr7 | 8,084 | 2,445 | 10,529 |
| chr8 | 7,550 | 2,216 | 9,766 |
| chr9 | 8,934 | 2,764 | 11,698 |
| Others | 705 | 178 | 883 |
| Total | 74,219 | 22,976 | 97,195 |