- Scientific Name
- Solanum habrochaites
- Common Names
- Lycopersicon hirsutum f. glabratum, Lycopersicon hirsutum
- Bioproject
- PRJCA008297
- Biosample
- SAMC605399
- Accession No.
- GWHBJTH00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR515507, CRR515508, CRR515509
- GVM variations of the species
- -
- Submitter Organization
- Wuhan Botanical Garden, Wuhan Botanical Garden, Chinese Academy of Sciences
- Contact
- MingHao Qu(quminghao21@mails.ucas.ac.cn)
- Sequence author(s)
- MingHao Qu
- Released Date
- 2022-06-19
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v1.0
- Sequencing & coverage
- PacBio 30.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- MingHao Qu, et al. Chromosome-scale genome assemblies of wild tomato relatives Solanum habrochaites and S. galapagense reveal structural variants associated with stress tolerance and terpene biosynthesis. Horticulture Research. 2022.
Statistics of Genome Assembly
| Genome size (bp) | 950,673,181 |
| GC content | 34.97% |
| Genome sequence No. | 1,009 |
| Maximum genome sequence length (bp) | 109,540,374 |
| Minimum genome sequence length (bp) | 3,000 |
| Average genome sequence length (bp) | 942,193 |
| Genome sequence N50 (bp) | 72,063,167 |
| Genome sequence N90 (bp) | 58,730,508 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 33,929 | 33,929 |