- Scientific Name
- Amaranthus tricolor
- Common Names
- Chinese spinach, tampala; Amaranthus gangeticus, Amaranthus mangostanus
- Bioproject
- PRJCA009026
- Biosample
- SAMC712129
- Accession No.
- GWHBJUH00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR462731
- GVM variations of the species
- -
- Submitter Organization
- Metagenomic group, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Hengchao Wang, 541407735@qq.com
- Sequence author(s)
- Wei Fan, Hengchao Wang
- Released Date
- 2022-09-21
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.14.2
ALLHiC v0.9.8 - Sequencing & coverage
- PacBio HiFi 45.0
Nanopore ultra-long 83.0
Hi-C 126.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Hengchao Wang, et al. Chromosome-scale Amaranthus tricolor genome provides insights into the evolution of the genus Amaranthus and the mechanism of betalain biosynthesis. DNA Research. 2022, 30(1).
Statistics of Genome Assembly
| Genome size (bp) | 520,084,113 |
| GC content | 31.93% |
| Genome sequence No. | 48 |
| Maximum genome sequence length (bp) | 45,445,981 |
| Minimum genome sequence length (bp) | 1,774 |
| Average genome sequence length (bp) | 10,835,086 |
| Genome sequence N50 (bp) | 31,692,477 |
| Genome sequence N90 (bp) | 24,324,110 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Total | 30,065 | 498 | 30,563 |