- Scientific Name
- Cervus nippon
- Common Names
- sika deer;
- Bioproject
- PRJCA010483
- Biosample
- SAMC818167
- Accession No.
- GWHBJVU00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR530854, CRR530853
- GVM variations of the species
- -
- Submitter Organization
- College of Wildlife and Protected Area, Northeast Forestry University
- Contact
- Ruobing Han, bing08102020@hotmail.com
- Sequence author(s)
- Heping Li, Ruobing Han
- Released Date
- 2022-12-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm v0.12
- Sequencing & coverage
- PacBio 37.0
Illumina NovaSeq 55.0
Hi-C 104.0 - Download
-
DNA
- Publication(s)
- Ruobing Han, et al. Haplotype-resolved Genome of Sika Deer Reveals Allele-specific Gene Expression and Chromosome Evolution. Genomics, Proteomics & Bioinformatics. 2022.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJVU00000000 | - | mCern1.2 | Draft genome in chromosome level | 2022-12-01 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 2,557,060,714 |
| GC content | 42.17% |
| Chromosomes sequence No. | 33 |
| Genome sequence No. | 2,387 |
| Maximum genome sequence length (bp) | 148,685,516 |
| Minimum genome sequence length (bp) | 5,000 |
| Average genome sequence length (bp) | 1,071,245 |
| Genome sequence N50 (bp) | 77,375,352 |
| Genome sequence N90 (bp) | 43,809,624 |