- Scientific Name
- Datura inoxia
- Common Names
- downy thornapple; sacred datura; Datura innoxia
- Bioproject
- PRJCA010759
- Biosample
- SAMC827855
- Accession No.
- GWHBJWV00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Agricultural Synthetic Biology Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Yaoyao Wu, wuyaoyao@caas.cn
- Sequence author(s)
- Yaoyao Wu, Honbo Li, Yong Hu
- Released Date
- 2023-03-21
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome
- Assembly method
- hifiasm v0.16.1-r375
juicer v1.6
4d-dna v180923 - Sequencing & coverage
- PacBio HiFi 14.76
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Yaoyao Wu, et al. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 2,080,854,404 |
| GC content | 38.88% |
| Genome sequence No. | 13 |
| Maximum genome sequence length (bp) | 214,108,585 |
| Minimum genome sequence length (bp) | 7,102,634 |
| Average genome sequence length (bp) | 160,065,723 |
| Genome sequence N50 (bp) | 179,543,544 |
| Genome sequence N90 (bp) | 140,215,000 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 34,205 | 34,205 |