- Scientific Name
- Solanum capsicoides
- Common Names
- cockroach-berry, devil's-apple, mata cucaracha; Solanum aculeatissimum auct. non Jacq.
- Bioproject
- PRJCA010759
- Biosample
- SAMC838690
- Accession No.
- GWHBKBM00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Agricultural Synthetic Biology Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Yaoyao Wu(wuyaoyao@caas.cn), Honbo Li(lihongbo_solab@163.com), Yong Hu(hydouble@126.com)
- Sequence author(s)
- Yaoyao Wu, Honbo Li, Yong Hu
- Released Date
- 2023-03-21
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Partial Genome
- Assembly method
- hifiasm v0.16.1-r375
juicer v1.6
3d-dna v180922 - Sequencing & coverage
- PacBio HiFi 29.23
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Yaoyao Wu, et al. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 990,230,067 |
| GC content | 35.68% |
| Scaffold sequence No. | 56 |
| Maximum scaffold sequence length (bp) | 105,935,571 |
| Minimum scaffold sequence length (bp) | 2,071 |
| Average scaffold sequence length (bp) | 17,682,680 |
| Scaffold N50 (bp) | 68,129,780 |
| Scaffold N90 (bp) | 20,206,366 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 35,500 | 35,500 |