- Scientific Name
- Solanum pseudocapsicum
- Common Names
- Jerusalem cherry;
- Bioproject
- PRJCA010759
- Biosample
- SAMC838704
- Accession No.
- GWHBKCA00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Agricultural Synthetic Biology Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Yaoyao Wu, wuyaoyao@caas.cn
- Sequence author(s)
- Yaoyao Wu, Honbo Li, Yong Hu
- Released Date
- 2023-03-21
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Partial Genome
- Assembly method
- hifiasm v0.16.1-r375
juicer v1.6
3d-dna v180922 - Sequencing & coverage
- PacBio HiFi 23.86
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Yaoyao Wu, et al. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 1,158,770,519 |
| GC content | 36.10% |
| Contig sequence No. | 222 |
| Maximum contig sequence length (bp) | 100,508,943 |
| Minimum contig sequence length (bp) | 12,922 |
| Average contig sequence length (bp) | 5,219,687 |
| Contig N50 (bp) | 65,322,781 |
| Contig N90 (bp) | 8,691,216 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 32,910 | 32,910 |