- Scientific Name
- Solanum scabrum
- Common Names
- -
- Bioproject
- PRJCA010759
- Biosample
- SAMC838706
- Accession No.
- GWHBKCC00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Agricultural Synthetic Biology Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Yaoyao Wu(wuyaoyao@caas.cn), Honbo Li(lihongbo_solab@163.com), Yong Hu(hydouble@126.com)
- Sequence author(s)
- Yaoyao Wu, Honbo Li, Yong Hu
- Released Date
- 2023-03-21
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Partial Genome
- Assembly method
- hifiasm v0.16.1-r375
juicer v1.6
3d-dna v180922 - Sequencing & coverage
- PacBio HiFi 9.05
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Yaoyao Wu, et al. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 3,006,187,379 |
| GC content | 36.64% |
| Contig sequence No. | 5,331 |
| Maximum contig sequence length (bp) | 8,620,688 |
| Minimum contig sequence length (bp) | 8,433 |
| Average contig sequence length (bp) | 563,907 |
| Contig N50 (bp) | 1,416,492 |
| Contig N90 (bp) | 330,622 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 96,290 | 96,290 |