- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA011290
- Biosample
- SAMC851987
- Accession No.
- GWHBKHH00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Academy of Life Science, Fujian Agriculture and Forestry University
- Contact
- wenlong lei, leiwenlong0310@163.com
- Sequence author(s)
- wenlong lei
- Released Date
- 2024-03-08
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- AllPaths 1.0
- Sequencing & coverage
- Illumina HiSeq 2500 50.0
- Download
- DNA GFF RNA Protein
- Publication(s)
- wenlong lei. Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis. nature genetics. 2021, 53: 1250–1259.
Statistics of Genome Assembly
| Genome size (bp) | 3,086,829,713 |
| GC content | 38.58% |
| Genome sequence No. | 267 |
| Maximum genome sequence length (bp) | 267,110,478 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 11,561,160 |
| Genome sequence N50 (bp) | 216,954,534 |
| Genome sequence N90 (bp) | 161,399,833 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Total | 48,401 | 43 | 48,444 |