- Scientific Name
- Amaranthus tricolor
- Common Names
- Chinese spinach, tampala; Amaranthus gangeticus, Amaranthus mangostanus
- Bioproject
- PRJCA009026
- Biosample
- SAMC712130
- Accession No.
- GWHBJUM00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR511439
- GVM variations of the species
- -
- Submitter Organization
- Metagenomic group, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Hengchao Wang, 541407735@qq.com
- Sequence author(s)
- Wei Fan, Hengchao Wang
- Released Date
- 2022-09-21
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.14.2
- Sequencing & coverage
- PacBio HiFi 42.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Hengchao Wang, et al. Chromosome-scale Amaranthus tricolor genome provides insights into the evolution of the genus Amaranthus and the mechanism of betalain biosynthesis. DNA Research. 2022, 30(1).
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBJUM00000000 | - | AtriGrn21 | Draft genome in contig level | 2022-09-21 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 555,444,195 |
| GC content | 32.54% |
| Contig sequence No. | 3,334 |
| Maximum contig sequence length (bp) | 12,077,820 |
| Minimum contig sequence length (bp) | 8,968 |
| Average contig sequence length (bp) | 166,600 |
| Contig N50 (bp) | 569,927 |
| Contig N90 (bp) | 54,005 |