- Scientific Name
- Streptococcus pseudopneumoniae
- Common Names
- -
- Bioproject
- PRJCA011698
- Biosample
- SAMC878269
- Accession No.
- GWHBKUM00000000
- GWH reannotation accession
- GWHRA_BKUM00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Precision Health Institute, BGI Life Science Research Institute
- Contact
- Yuanqiang Zou, zouyuanqiang@genomics.cn
- Sequence author(s)
- Yuanqiang Zou
- Released Date
- 2025-02-08
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo v2.04
- Sequencing & coverage
- Illumina HiSeq 2000 100
- Download
- DNA Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBKUM00000000 | GWHRA_BKUM00000000.1 | ODP-AM05-458 | Draft genome in scaffold level | 2025-02-08 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,133,659 |
| GC content | 39.93% |
| Scaffold sequence No. | 28 |
| Maximum scaffold sequence length (bp) | 576,583 |
| Minimum scaffold sequence length (bp) | 582 |
| Average scaffold sequence length (bp) | 76,202 |
| Scaffold N50 (bp) | 299,978 |
| Scaffold N90 (bp) | 54,190 |
Statistics of Genome Assembly
| Genome size (bp) | 2,133,659 |
| GC content | 39.93% |
| Scaffold sequence No. | 28 |
| Maximum scaffold sequence length (bp) | 576,583 |
| Minimum scaffold sequence length (bp) | 582 |
| Average scaffold sequence length (bp) | 76,202 |
| Scaffold N50 (bp) | 299,978 |
| Scaffold N90 (bp) | 54,190 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 2,031 | 41 | 3 | 64 | 47 | 2,186 |