- Scientific Name
- Panax ginseng
- Common Names
- Asiatic ginseng, Chinese ginseng, ginseng, hong shen, insam, jinso, Korean ginseng, ninjin, ren seng, sansam;
- Bioproject
- PRJCA006678
- Biosample
- SAMC461553
- Accession No.
- GWHBEIL00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences, Sun Yat-sen University
- Contact
- Zhenhui wang, wzhjlau@163.com
- Sequence author(s)
- xinfeng wang
- Released Date
- 2022-09-21
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Nextdenovo version1
- Sequencing & coverage
- Nanopore 68.18
- Download
- DNA GFF RNA Protein
- Publication(s)
- Zhen-Hui Wang, et al. Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax. Nature Communications. 2022, 13(1): 1902 .
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBEIL00000000 | - | Panax ginseng genome | Draft genome in scaffold level | 2022-03-05 |
DNA
|
| GWHBEIL00000000.1 | - | P. ginseng | Draft genome in scaffold level | 2022-09-21 |
DNA
GFF
RNA
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 3,355,148,547 |
| GC content | 34.25% |
| Genome sequence No. | 97 |
| Maximum genome sequence length (bp) | 190,061,324 |
| Minimum genome sequence length (bp) | 48,240 |
| Average genome sequence length (bp) | 34,589,160 |
| Genome sequence N50 (bp) | 143,450,974 |
| Genome sequence N90 (bp) | 103,702,123 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 65,913 | 65,913 |