- Scientific Name
- Saururus chinensis
- Common Names
- -
- Bioproject
- PRJCA008755
- Biosample
- SAMC816572
- Accession No.
- GWHBMBM00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR529995
- GVM variations of the species
- -
- Submitter Organization
- College of horticulture, Nanjing Agricultural University
- Contact
- Jia-Yu Xue(xuejy@njau.edu.cn)
- Sequence author(s)
- Jia-Yu Xue
- Released Date
- 2023-01-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- canu 1.8
- Sequencing & coverage
- PacBio 99.2
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Jiayu Xue, et al. The Saururus chinensis genome provides insights into the evolution of pollinationstrategies and herbaceousness in magnoliids. The Plant journal : for cell and molecular biology. 2023, 113(5): 1021-34.
Statistics of Genome Assembly
| Genome size (bp) | 539,018,180 |
| GC content | 37.74% |
| Chromosomes sequence No. | 11 |
| Genome sequence No. | 38 |
| Maximum genome sequence length (bp) | 70,783,412 |
| Minimum genome sequence length (bp) | 1,086 |
| Average genome sequence length (bp) | 14,184,689 |
| Genome sequence N50 (bp) | 47,843,222 |
| Genome sequence N90 (bp) | 39,887,764 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 35,673 | 35,673 |
| Others | 254 | 254 |
| Total | 35,927 | 35,927 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 5,098 | 5,098 |
| chr10 | 2,708 | 2,708 |
| chr11 | 2,237 | 2,237 |
| chr2 | 4,537 | 4,537 |
| chr3 | 3,196 | 3,196 |
| chr4 | 3,246 | 3,246 |
| chr5 | 3,177 | 3,177 |
| chr6 | 2,779 | 2,779 |
| chr7 | 3,252 | 3,252 |
| chr8 | 2,821 | 2,821 |
| chr9 | 2,622 | 2,622 |
| Others | 254 | 254 |
| Total | 35,927 | 35,927 |