Scientific Name
Solanum lycopersicum
Common Names
tomato; Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
Bioproject
PRJCA010993
Biosample
SAMC911767
Accession No.
GWHBOUG00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
26,938,825 (SNP), 3,724,480 (Indel)
Submitter Organization
Agriculture, Sun Yat-sen University
Contact
Yuanxian Gan, ganyx6@mail2.sysu.edu.cn
Sequence author(s)
Yuanxian Gan
Released Date
2022-10-05
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
NECAT v0.0.1; NextPolish v1.4.0; RagTag v2.0.1 2022-10
Sequencing & coverage
Nanopore; Illumina 139.7
Download
DNA
Publication(s)
-
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHBOUG00000000 - EA01640 Draft genome in chromosome level 2022-10-05 DNA

Statistics of Genome Assembly

Genome size (bp) 787,360,660
GC content 34.49%
Genome sequence No. 388
Maximum genome sequence length (bp) 90,460,582
Minimum genome sequence length (bp) 1,003
Average genome sequence length (bp) 2,029,280
Genome sequence N50 (bp) 65,004,680
Genome sequence N90 (bp) 54,014,636