- Scientific Name
- Solanum lycopersicum
- Common Names
- tomato; Lycopersicon esculentum, Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
- Bioproject
- PRJCA010993
- Biosample
- SAMC911771
- Accession No.
- GWHBOUK00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 26,938,825 (SNP), 3,724,480 (Indel)
- Submitter Organization
- Agriculture, Sun Yat-sen University
- Contact
- Yuanxian Gan(ganyx6@mail2.sysu.edu.cn)
- Sequence author(s)
- Yuanxian Gan
- Released Date
- 2022-10-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- NECAT v0.0.1; NextPolish v1.4.0; RagTag v2.0.1 2022-10
- Sequencing & coverage
- Nanopore; Illumina 123.9
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBOUK00000000 | - | LYC3153 | Draft genome in chromosome level | 2022-10-05 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 784,579,386 |
| GC content | 34.36% |
| Genome sequence No. | 464 |
| Maximum genome sequence length (bp) | 92,318,031 |
| Minimum genome sequence length (bp) | 1,029 |
| Average genome sequence length (bp) | 1,690,904 |
| Genome sequence N50 (bp) | 65,110,555 |
| Genome sequence N90 (bp) | 53,538,993 |