- Scientific Name
- Sus scrofa
- Common Names
- pigs, swine, wild boar; pig;
- Bioproject
- PRJCA012263
- Biosample
- SAMC917838
- Accession No.
- GWHBOYB00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 90,901,492 (SNP), 12,087,428 (Indel)
- Submitter Organization
- Life Sciences college, Hunan Normal University
- Contact
- Leli Wang(2291017901@qq.com)
- Sequence author(s)
- Leli Wang
- Released Date
- 2022-10-28
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 2.5.2
- Sequencing & coverage
- PacBio 42
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Leli Wang, et al. Biosynthetic Gene Clusters from Swine Gut Microbiome. microorganisms. 2023, 11: 434.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBOYB00000000 | - | pi3 | Draft genome in contig level | 2022-10-28 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 46,571,713 |
| GC content | 43.12% |
| Contig sequence No. | 1,890 |
| Maximum contig sequence length (bp) | 247,047 |
| Minimum contig sequence length (bp) | 10,002 |
| Average contig sequence length (bp) | 24,641 |
| Contig N50 (bp) | 29,233 |
| Contig N90 (bp) | 11,753 |