- Scientific Name
- Sus scrofa
- Common Names
- pigs, swine, wild boar; pig;
- Bioproject
- PRJCA012263
- Biosample
- SAMC917839
- Accession No.
- GWHBOYC00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 90,901,492 (SNP), 12,087,428 (Indel)
- Submitter Organization
- Life Sciences college, Hunan Normal University
- Contact
- Leli Wang, 2291017901@qq.com
- Sequence author(s)
- Leli Wang
- Released Date
- 2022-10-28
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 2.5.2
- Sequencing & coverage
- PacBio 42
- Download
- DNA
- Publication(s)
- Leli Wang, et al. Biosynthetic Gene Clusters from Swine Gut Microbiome. microorganisms. 2023, 11: 434.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBOYC00000000 | - | pi4 | Draft genome in contig level | 2022-10-28 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 15,539,056 |
| GC content | 41.47% |
| Contig sequence No. | 316 |
| Maximum contig sequence length (bp) | 99,323 |
| Minimum contig sequence length (bp) | 29,728 |
| Average contig sequence length (bp) | 49,174 |
| Contig N50 (bp) | 50,880 |
| Contig N90 (bp) | 32,786 |