- Scientific Name
- Sus scrofa
- Common Names
- pigs, swine, wild boar; pig;
- Bioproject
- PRJCA012263
- Biosample
- SAMC917857
- Accession No.
- GWHBOYU00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 90,901,492 (SNP), 12,087,428 (Indel)
- Submitter Organization
- Life Sciences college, Hunan Normal University
- Contact
- Leli Wang, 2291017901@qq.com
- Sequence author(s)
- Leli Wang
- Released Date
- 2022-10-28
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 2.5.2
- Sequencing & coverage
- PacBio 42
- Download
- DNA
- Publication(s)
- Leli Wang, et al. Biosynthetic Gene Clusters from Swine Gut Microbiome. microorganisms. 2023, 11: 434.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBOYU00000000 | - | pi22 | Draft genome in contig level | 2022-10-28 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 135,278,032 |
| GC content | 38.97% |
| Contig sequence No. | 72,008 |
| Maximum contig sequence length (bp) | 270,964 |
| Minimum contig sequence length (bp) | 500 |
| Average contig sequence length (bp) | 1,879 |
| Contig N50 (bp) | 3,588 |
| Contig N90 (bp) | 671 |