- Scientific Name
- Ailuropoda melanoleuca
- Common Names
- giant panda;
- Bioproject
- PRJCA013191
- Biosample
- SAMC989254
- Accession No.
- GWHBPAN00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR732848, CRR732849
- GVM variations of the species
- 11,820,056 (SNP), 2,544,981 (Indel)
- Submitter Organization
- Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences
- Contact
- Dengfeng Guan(guandengfeng@ioz.ac.cn)
- Sequence author(s)
- Dengfeng Guan
- Released Date
- 2023-11-14
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Falcon NA
LACHESIS NA - Sequencing & coverage
- PacBio 107.0
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Dengfeng Guan, et al. Taking a color photo: A homozygous 25- bp deletion in Bace2may cause brown- and- white coat color in giant pandas. PNAS. 2024, 121(11): e2317430121.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBPAN00000000 | - | GP1 | Draft genome in chromosome level | 2023-11-14 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 2,468,676,436 |
| GC content | 41.85% |
| Genome sequence No. | 1,835 |
| Maximum genome sequence length (bp) | 201,511,708 |
| Minimum genome sequence length (bp) | 1,017 |
| Average genome sequence length (bp) | 1,345,328 |
| Genome sequence N50 (bp) | 124,423,594 |
| Genome sequence N90 (bp) | 40,484,927 |