- Scientific Name
- metagenome
- Common Names
- environmental sequence, metagenome sequence
- Bioproject
- PRJCA010893
- Biosample
- SAMC834046
- Accession No.
- GWHBPDC00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR537874
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Pig Genetic Improvement and Production Technology, Jiangxi Agricultural University
- Contact
- Congying Chen(chcy75@hotmail.com)
- Sequence author(s)
- Congying Chen
- Released Date
- 2022-12-10
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Megahit 1.2.9
- Sequencing & coverage
- DNBSEQ-t7 40
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Yunyan Zhou, et al. Characterization of the pig lower respiratory tract antibiotic resistome. Nature Communications. 2023, 14.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBPDC00000000 | - | 385604.12.permissive | Draft genome in scaffold level | 2022-12-10 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 878,012 |
| GC content | 28.58% |
| Scaffold sequence No. | 35 |
| Maximum scaffold sequence length (bp) | 130,253 |
| Minimum scaffold sequence length (bp) | 514 |
| Average scaffold sequence length (bp) | 25,086 |
| Scaffold N50 (bp) | 43,372 |
| Scaffold N90 (bp) | 16,296 |