- Scientific Name
- metagenome
- Common Names
- environmental sequence, metagenome sequence
- Bioproject
- PRJCA010893
- Biosample
- SAMC833416
- Accession No.
- GWHBPDX00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR537244
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Pig Genetic Improvement and Production Technology, Jiangxi Agricultural University
- Contact
- Congying Chen(chcy75@hotmail.com)
- Sequence author(s)
- Congying Chen
- Released Date
- 2022-12-10
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Megahit 1.2.9
- Sequencing & coverage
- DNBSEQ-t7 40
- Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Yunyan Zhou, et al. Characterization of the pig lower respiratory tract antibiotic resistome. Nature Communications. 2023, 14.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBPDX00000000 | - | 5857.3.permissive | Draft genome in scaffold level | 2022-12-10 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 870,132 |
| GC content | 28.52% |
| Scaffold sequence No. | 19 |
| Maximum scaffold sequence length (bp) | 369,034 |
| Minimum scaffold sequence length (bp) | 530 |
| Average scaffold sequence length (bp) | 45,796 |
| Scaffold N50 (bp) | 160,921 |
| Scaffold N90 (bp) | 24,569 |