- Scientific Name
- Klebsiella pneumoniae
- Common Names
- Bacillus pneumoniae, Bacterium pneumoniae crouposae, Hyalococcus pneumoniae, 'Klebsiella aerogenes' (Kruse) Taylor et al. 1956, Klebsiella pneumoniae aerogenes
- Bioproject
- PRJCA014052
- Biosample
- SAMC1031337
- Accession No.
- GWHBQFF00000000
- GWH reannotation accession
- GWHRA_BQFF00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Global Health, Shanghai Jiao Tong University School of Medicine
- Contact
- Yongzhang Zhu(yzhzhu@sjtu.edu.cn)
- Sequence author(s)
- MingQuan, Gang
- Released Date
- 2023-01-01
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes 3.14.1
- Sequencing & coverage
- Illumina NovaSeq 400
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHBQFF00000000 | GWHRA_BQFF00000000.1 | SH030 | Draft genome in contig level | 2023-01-01 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,766,841 |
| GC content | 56.82% |
| Contig sequence No. | 109 |
| Maximum contig sequence length (bp) | 367,412 |
| Minimum contig sequence length (bp) | 517 |
| Average contig sequence length (bp) | 52,907 |
| Contig N50 (bp) | 191,337 |
| Contig N90 (bp) | 55,017 |
Statistics of Genome Assembly
| Genome size (bp) | 5,766,841 |
| GC content | 56.82% |
| Contig sequence No. | 109 |
| Maximum contig sequence length (bp) | 367,412 |
| Minimum contig sequence length (bp) | 517 |
| Average contig sequence length (bp) | 52,907 |
| Contig N50 (bp) | 191,337 |
| Contig N90 (bp) | 55,017 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5,607 | 79 | 10 | 6 | 132 | 130 | 5,964 |