- Scientific Name
- Rosa rugosa
- Common Names
- Japanese rose, Turkestan rose;
- Bioproject
- PRJCA014293
- Biosample
- SAMC1041486
- Accession No.
- GWHBQTZ00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR640732, CRR640733
- GVM variations of the species
- -
- Submitter Organization
- Bioinformatics, Kunming Institute Of Botany, Chinese Academy of Sciences (CAS)
- Contact
- Rengang Zhang, zrg1989@qq.com
- Sequence author(s)
- Rengang Zhang
- Released Date
- 2024-09-23
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.16.1-r375
- Sequencing & coverage
- PacBio 100.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Dan Liu, et al. Telomere-to-telomere, gap-free assembly of the Rosa rugosa reference genome. Horticultural Plant Journal. 2024.
Statistics of Genome Assembly
| Genome size (bp) | 444,553,897 |
| GC content | 39.31% |
| Organellas sequence No. | 2 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Total | |
|---|---|---|---|---|---|
| Chloroplast | 25 | 24 | 0 | 16 | 65 |
| Mitochondrion | 12 | 17 | 0 | 16 | 45 |
| Others | 46,097 | 632 | 487 | 602 | 47,818 |
| Total | 46,134 | 673 | 487 | 634 | 47,928 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Total |
|---|---|---|---|---|---|
| Chloroplast | 25 | 24 | 0 | 16 | 65 |
| Mitochondrion | 12 | 17 | 0 | 16 | 45 |
| Others | 46,097 | 632 | 487 | 602 | 47,818 |
| Total | 46,134 | 673 | 487 | 634 | 47,928 |