- Scientific Name
- Artemisia argyi
- Common Names
- -
- Bioproject
- PRJCA010808
- Biosample
- SAMC827885
- Accession No.
- GWHBRAE00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR546606, CRR546605, CRR546604, CRR546603
- GVM variations of the species
- -
- Submitter Organization
- Key Laboratory of Chinese Medicine Resources Conservation, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College
- Contact
- Hongmei Luo, hmluo@implad.ac.cn
- Sequence author(s)
- Hongmei Luo, Hongyu Chen, Miaoxian Guo, Shuting Dong
- Released Date
- 2023-01-20
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu v2.2
- Sequencing & coverage
- PacBio 130.0
Illumina HiSeq 4000 110.0 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Hongyu Chen, et al. A chromosome-scale genome assembly of Artemisia argyi reveals unbiased subgenome evolution and key contributions of gene duplication to volatile terpenoiddiversity. Plant Communications. 2023, 4(3).
Statistics of Genome Assembly
| Genome size (bp) | 3,895,706,677 |
| GC content | 35.45% |
| Chromosomes sequence No. | 17 |
| Genome sequence No. | 2,443 |
| Maximum genome sequence length (bp) | 330,284,332 |
| Minimum genome sequence length (bp) | 16,260 |
| Average genome sequence length (bp) | 1,594,640 |
| Genome sequence N50 (bp) | 214,130,028 |
| Genome sequence N90 (bp) | 186,324,242 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 60,974 | 60,974 |
| Others | 1,869 | 1,869 |
| Total | 62,843 | 62,843 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,577 | 3,577 |
| chr10 | 6,219 | 6,219 |
| chr11 | 3,330 | 3,330 |
| chr12 | 3,515 | 3,515 |
| chr13 | 3,738 | 3,738 |
| chr14 | 3,390 | 3,390 |
| chr15 | 3,314 | 3,314 |
| chr16 | 2,840 | 2,840 |
| chr17 | 3,909 | 3,909 |
| chr2 | 3,190 | 3,190 |
| chr3 | 2,920 | 2,920 |
| chr4 | 3,317 | 3,317 |
| chr5 | 3,355 | 3,355 |
| chr6 | 3,721 | 3,721 |
| chr7 | 3,680 | 3,680 |
| chr8 | 2,843 | 2,843 |
| chr9 | 4,116 | 4,116 |
| Others | 1,869 | 1,869 |
| Total | 62,843 | 62,843 |