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  • Magnolia sinica
  • MsV1
    • Scientific Name
    Magnolia sinica
    Common Names
    Manglietia sinica, Manglietiastrum sinicum, Pachylarnax sinica (Y.W.Law) N.H.Xia & C.Y.Wu
    Bioproject
    PRJCA015437
    Biosample
    SAMC1151901
    Accession No.
    GWHBWDZ00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR710158
    GVM variations of the species
    -
    Submitter Organization
    Bioinformatics, Kunming Institute Of Botany, Chinese Academy of Sciences (CAS)
    Contact
    Rengang Zhang, zhangrengang@mail.kib.ac.cn
    Sequence author(s)
    Rengang Zhang
    Released Date
    2023-05-07
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    nextDenovo 2.1
    Sequencing & coverage
    ONT 100.0
    Download
    DNA GFF RNA CDS Protein
    Publication(s)
    Lei Cai, et al. The chromosome-scale genome of Magnolia sinica (Magnoliaceae) provides insights into the conservation of plant species with extremely small populations (PSESP). Gigascience. 2024, 13(1): giad110.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHBWDZ00000000 - MsV1 Draft genome in chromosome level 2023-05-07 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,839,595,854
    GC content 40.18%
    Organellas sequence No. 1
    Genome sequence No. 130
    Maximum genome sequence length (bp) 141,926,363
    Minimum genome sequence length (bp) 5,003
    Average genome sequence length (bp) 14,150,737
    Genome sequence N50 (bp) 92,164,922
    Genome sequence N90 (bp) 73,752,208
    Annotation of Whole Genome Assembly
    Protein tRNA rRNA ncRNA Total
    Chloroplast 26 26 0 14 66
    Others 59,543 632 71 497 60,743
    Total 59,569 658 71 511 60,809
    Annotation Details
    ChrID Protein tRNA rRNA ncRNA Total
    Chloroplast 26 26 0 14 66
    Others 59,543 632 71 497 60,743
    Total 59,569 658 71 511 60,809