- Scientific Name
- Castanopsis hystrix
- Common Names
- -
- Bioproject
- PRJCA015225
- Biosample
- SAMC1129751
- Accession No.
- GWHBWDD00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- South China National Botanical Garden, South China National Botanical Garden
- Contact
- Weicheng Huang, huangwc0921@163.com
- Sequence author(s)
- Hanhan Xia
- Released Date
- 2023-03-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- GS De Novo Assembler v0.15.4
- Sequencing & coverage
- PacBio 31.0
- Download
- DNA GFF RNA Protein
- Publication(s)
- Weicheng Huang, et al. A chromosome-scale genome assembly of Castanopsis hystrix provides new insightsinto the evolution and adaptation of Fagaceae species. Frontiers in Plant Science. 2023, 14.
Statistics of Genome Assembly
| Genome size (bp) | 882,694,700 |
| GC content | 35.48% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 172 |
| Maximum genome sequence length (bp) | 103,154,563 |
| Minimum genome sequence length (bp) | 14,129 |
| Average genome sequence length (bp) | 5,131,946 |
| Genome sequence N50 (bp) | 75,625,220 |
| Genome sequence N90 (bp) | 53,745,143 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Chromosome | 36,585 | 833 | 37,418 |
| Others | 315 | 17 | 332 |
| Total | 36,900 | 850 | 37,750 |
Annotation Details
| ChrID | Protein | Pseudogene | Total |
|---|---|---|---|
| chr1 | 3,184 | 100 | 3,284 |
| chr10 | 3,151 | 72 | 3,223 |
| chr11 | 2,495 | 42 | 2,537 |
| chr12 | 3,783 | 110 | 3,893 |
| chr2 | 3,308 | 76 | 3,384 |
| chr3 | 2,402 | 56 | 2,458 |
| chr4 | 2,611 | 59 | 2,670 |
| chr5 | 2,628 | 71 | 2,699 |
| chr6 | 2,960 | 52 | 3,012 |
| chr7 | 5,014 | 78 | 5,092 |
| chr8 | 2,453 | 52 | 2,505 |
| chr9 | 2,596 | 65 | 2,661 |
| Others | 315 | 17 | 332 |
| Total | 36,900 | 850 | 37,750 |