- Scientific Name
- Solanum lyratum
- Common Names
- Solanum cathayanum
- Bioproject
- PRJCA010759
- Biosample
- SAMC1155905
- Accession No.
- GWHCAXC00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Agricultural Synthetic Biology Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Yaoyao Wu, wuyaoyao@caas.cn
- Sequence author(s)
- Yaoyao Wu, Honbo Li, Yong Hu
- Released Date
- 2023-03-23
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Partial Genome
- Assembly method
- hifiasm v0.16.1-r375
juicer v1.6
3d-dna v180922 - Sequencing & coverage
- PacBio HiFi 25.08
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Yaoyao Wu, et al. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 1,112,153,900 |
| GC content | 37.38% |
| Contig sequence No. | 405 |
| Maximum contig sequence length (bp) | 93,024,019 |
| Minimum contig sequence length (bp) | 1,222 |
| Average contig sequence length (bp) | 2,746,059 |
| Contig N50 (bp) | 28,321,776 |
| Contig N90 (bp) | 6,692,194 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 32,529 | 32,529 |