- Scientific Name
- Solanum viarum
- Common Names
- tropical soda-apple;
- Bioproject
- PRJCA010759
- Biosample
- SAMC1155909
- Accession No.
- GWHCAXG00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Agricultural Synthetic Biology Center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Yaoyao Wu(wuyaoyao@caas.cn), Honbo Li(lihongbo_solab@163.com), Yong Hu(hydouble@126.com)
- Sequence author(s)
- Yaoyao Wu, Honbo Li, Yong Hu
- Released Date
- 2023-03-23
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome
- Assembly method
- hifiasm v0.16.1-r375
juicer v1.6
3d-dna v180922 - Sequencing & coverage
- PacBio HiFi 25.09
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Yaoyao Wu, et al. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023.
Statistics of Genome Assembly
| Genome size (bp) | 1,139,547,562 |
| GC content | 36.44% |
| Genome sequence No. | 14 |
| Maximum genome sequence length (bp) | 119,464,842 |
| Minimum genome sequence length (bp) | 3,475,937 |
| Average genome sequence length (bp) | 81,396,254 |
| Genome sequence N50 (bp) | 91,386,563 |
| Genome sequence N90 (bp) | 78,660,495 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 36,834 | 36,834 |