- Scientific Name
- Malus spectabilis
- Common Names
- Chinese flowering crabapple;
- Bioproject
- PRJCA015452
- Biosample
- SAMC1150994
- Accession No.
- GWHCAXV00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Horticulture, China Agricultural University
- Contact
- Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Haochen Sun, Shiyao Wang, Zijun Wang
- Released Date
- 2025-02-10
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15_r334
- Sequencing & coverage
- PacBio 44.39
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Wei Li, et al. Pan-genome analysis reveals the evolution and diversity of Malus. Nature Genetics. 2025, 57(5): 1274-1286.
Statistics of Genome Assembly
| Genome size (bp) | 669,196,230 |
| GC content | 38.31% |
| Contig sequence No. | 306 |
| Maximum contig sequence length (bp) | 46,474,318 |
| Minimum contig sequence length (bp) | 8,664 |
| Average contig sequence length (bp) | 2,186,916 |
| Contig N50 (bp) | 26,475,485 |
| Contig N90 (bp) | 6,684,648 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 48,054 | 48,054 |